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Scholarperdia web page on Splicing systems Rosalba Zizza (2010) Splicing systems, Scholarpedia, 5(7):9397.
Category: Molecular Computing.
Abstract of PhD Thesis on the
Bulletin of EATCS
n.78, October 2002, pp. 319-322.[.ps]
PhD Thesis
gzipped file,
Appendix: splicing in cartoons
powerpoint file
Internal Rapport
-
P. Bonizzoni, R.Z. (2000), A characterization of regular splicing
languages, Rapp. Int. 254-00, Dip. di Sc. dell'Inf., Universita'
di Milano.
Italian Conferences
-
C. De Felice, R.Z. (1998), Factorizing Codes and Krasner Factorizations,
Proc. of ICTCS98, (Prato, Italia, 9-11 Novembre 1998), P. Degano, U. Vaccaro,
G. Pirillo (Eds.), World Scientific, pp. 347-358. [.ps]
-
Luca D'Auria, R.Z. (2010),
A note on the McCloskey's algorithm for deciding whether a
regular language is a code, Proc. of
ICTCS 2010,
12th Italian Conference
on Theoretical Computer Science (Camerino, Italy,
September 15-17, 2010).
International Conferences
-
P. Bonizzoni, C. De Felice, G. Mauri, R.Z. (1999), Linear and Circular
Splicing, scheduled talk at WORDS99
[.ps]
-
P. Bonizzoni, C. Ferretti, G. Mauri, R.Z. (2000), Separating some
splicing models, Proc. of GRAMMAR SYSTEMS2000
(Bad Ischl, Austria, 3-7
Luglio 2000), R. Freund, A. Kelemenova (Eds.), Silesian University at Opava,
ISBN 80-7248-067-7, pp. 55-60 [.ps]
-
P. Bonizzoni, C. De Felice, G. Mauri, R.Z. (2001), DNA and circular
splicing, in ``DNA Computing'', Sixth International Workshop on DNA based
computers, DNA2000 (Leiden, Olanda, 13-17 Giugno, 2000), Lecture Notes
in Computer Science 2054, A. Condon and G. Rozenberg (Eds.), Springer-Verlag,
pp. 117-129. [.ps,
Slides]
-
P. Bonizzoni, C. De Felice, G. Mauri, R.Z. (2001), Developments
on Circular Splicing, scheduled talk at WORDS01
(Palermo,
Italia, 17-21 Settembre 2001) [.ps]
-
P. Bonizzoni, C. De Felice, G. Mauri, R.Z. (2002), Decision problems
for linear and circular splicing systems, Invited talk (G. Mauri) in "Developments
in Language Theory", Sixth International Conference DLT02
(Kyoto, Giappone, 18-21 Settembre 2002), Lecture Notes in Computer Science
2450, M. Ito and M. Toyama (Eds.), Springer-Verlag, pp. 78-92. [ .pdf
]
-
P. Bonizzoni, C. De Felice, G. Mauri, R.Z. (2003), Regular languages
generated by reflexive finite splicing systems, in "Developments in Language
Theory", Seventh International Conference DLT03
(Szeged, Hungary, 7-11 July, 2003), Lecture Notes in Computer Science 2710,
Z. Esik, Z. Fulop (Eds.), Springer-Verlag, pp. 134-145. [pdf].
-
S. Verlan, R. Zizza (2003), 1-splicing vs. 2-splicing: separating
results, Proceedings of "WORDS03"
(10-14 Settembre 2003, Turku, Finlandia), International Conference on Combinatorics
on Words (10-13 September 2003, Turku, Finland), T. Harju and J. Karhumaki
(Eds.), TUCS General Publication (Turku Centre for Computer Science), No.
27, August 2003, ISBN 952-12-1211-X, pp. 320-331. [.ps]
-
C. De Felice, G. Fici, R.Z. (2007),
Marked systems and Circular splicing,
communicated at
"AutoMathA"
(18-22 June, Palermo, Italy).
-
C. De Felice, G. Fici, R.Z. (2007),
Marked systems and Circular splicing,
"FCT07"
(August 27-30, Budapest, Hungary),
16th International Symposium on Fundamentals of Computation Theory,
Lecture Notes in Computer Science 4639, pp. 238-249.
-
P. Bonizzoni, C. De Felice, R.Z. (2009),
On circular semi-simple splicing systems,
communicated at
"AutoMathA 2009"
(8-12 June, Liege, Belgium)
pdf.
-
P. Bonizzoni, C. De Felice, R.Z. (2009),
Circular languages generated
by complete splicing systems and pure unitary languages,
"DCM 2009",
5th International workshop on Developments
in Computational Models
(11 July, Rhodes, Greece), satellite workshop of ICALP 2009,
download of the
preproceedings.
Electronic Proceedings in Theoretical Computer Science,
S. Barry Cooper, Vincent Danos Eds., vol. 9, p. 22-31,
ArXiv
-
M. Cianciulli, R. Zaccagnino, R.Z. (2012),
An easy automata based algorithm for testing coding
properties of infinite sets of (DNA) words,
"TPNC2012"
(October 2-4, Tarragona, Spain),
1st International Conference on the Theory and Practice of Natural Computing,
Lecture Notes in Computer Science 7505, pp. 121-132.
-
C. De Felice, R. Zaccagnino, R.Z. (2014),
Unavoidable sets and regularity of
languages generated by (1,3)-circular
splicing systems,
TPNC2014, Lecture Notes in Computer Science 8890, pp.169-180
International Journal
-
P. Bonizzoni, C. Ferretti, G. Mauri, R.Z. (2001), Separating some
splicing models, Information Processing Letters, 79 (6), pp.255-259.
[.ps]
-
P. Bonizzoni, C. De Felice, G. Mauri, R.Z. (2004), Circular splicing
and regularity, Theoretical Informatics and Applications 38, pp. 189-228.
-
P. Bonizzoni , C. De Felice, R.Z. (2005), The structure of reflexive regular
splicing languages via Schutzenberger constants, Theoretical
Computer Science, 334, pp.71-98.
-
P. Bonizzoni, C. De Felice, G. Mauri, R.Z. (2005),
On the power
of circular splicing,
Discrete Applied Mathematics, 150, pp. 51-66.
-
P. Bonizzoni, C. De Felice, G. Mauri, R.Z. (2006),
Linear splicing and syntactic monoid,
Discrete Applied Mathematics, 154, pp. 452-470.
-
C. De Felice, G. Fici, R.Z. (2009), A characterization of regular
circular
languages generated by marked splicing systems,
Theoretical Computer Science,
410, pp. 4937-4960.
- P. Bonizzoni, C. De Felice, G. Fici, R.Z. (2010),
On regularity of circular splicing languages: a survey and new
developments,
Natural Computing,
Volume 9, Issue 2, pp. 397-420.
-
P. Bonizzoni, C. De Felice, R.Z. (2010),
A characterization of (regular) circular languages generated by
monotone complete splicing systems,
Theoretical Computer
Science
411(48), pp. 4149-4161.
-
L. Boasson, P. Bonizzoni, C. De Felice, I. Fagnot, G. Fici, R. Zaccagnino,
R.Z. (2014),
Splicing Systems from Past to Future: Old and New Challenges,
Discrete Mathematics and Computer Science,
pp. 51-76.
Submitted
-
R. Zaccagnino, R. Zizza, C. Zottoli (2015),
Algorithms for testing coding properties of infinite sets of (DNA) words,
submitted to international journal.
-
CNR/CNRS (2000-2001): "Linguaggi Formali e Dinamica Simbolica: metodi combinatori".
-
CNR/CNRS (2002-2003): "Teoria degli automi - Theorie des automates".
-
EMCC: European Molecular
Computing Consortium.
-
MolCoNet: A Thematic Network on Molecular Computing - EU Project
under The Fifth Framework Programme, project IST (Information Society Technologies
Programme) 2001-32008 . Scientific chairman: Prof. G. Mauri.
1/ 12/ 2001 - 30/ 11/ 2004.
-
Progetto 60% (2001) Università di Salerno: "Linguaggi Formali e
Modelli di Calcolo".
-
Progetto 60% (2003) Università di Salerno: "Linguaggi Formali e
Codici: Problemi classici e Modelli innovativi''.
- Progetto 60% (2004) Università di Salerno:
"Linguaggi formali e codici: modelli e caratterizzazioni strutturali".
- Progetto 60% (2005) Università di Salerno:
"Linguaggi formali e codici: problemi classici
e modelli innovativi".
- Progetto 60% (2006) Università di Salerno:
"Linguaggi formali e codici a lunghezza variabile:
proprietà strutturali e nuovi modelli di
rappresentazione".
- Progetto 60% (2007) Università di Salerno:
"Proprieta' strutturali e nuovi modelli di
rappresentazione nella teoria dei linguaggi
formali".
- Progetto 60% (2008) Università di Salerno:
"Estensioni della teoria
dei linguaggi formali e
loro proprietà strutturali ".
-
FARB Project (2009-2011): "Automi e
Linguaggi Formali: aspetti emergenti e
fondazionali".
-
FARB Project (2010-2012): "Aspetti
emergenti e fondazionali nella teoria degli automi e dei linguaggi
formali".
-
MIUR Project (2001-2003): "Linguaggi Formali e Automi: teoria ed applicazioni".
-
MIUR Project (2003-2005): "Linguaggi Formali ed Automi: Metodi, Modelli
e Applicazioni"
-
MIUR Project (2005-2007): "Automi e Linguaggi Formali: aspetti
matematici e applicativi".
-
MIUR Project (2007): "Mathematical aspects and emerging
applications of automata and formal languages".
Teaching activity
(only in italian)
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